Searching for biochemistry : 116 results found | RSS Feed for this search

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A Fascination with Vision: What nature can teach us

Description

Professor Anthony Watts, C W Maplethorpe Fellow in Biological Sciences delivers a very interesting lecture entitled 'A Fascination with Vision: What nature can teach us'. Wales; http://creativecommons.org/licenses/by-nc-sa/2.0/uk/

Subjects

vision | optics | lenses | biology | biochemistry | vision | optics | lenses | biology | biochemistry | 2015-11-07

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HST.121 Gastroenterology (MIT) HST.121 Gastroenterology (MIT)

Description

The most recent knowledge of the anatomy, physiology, biochemistry, biophysics, and bioengineering of the gastrointestinal tract and the associated pancreatic, liver and biliary tract systems is presented and discussed. Gross and microscopic pathology and the clinical aspects of important gastroenterological diseases are then presented, with emphasis on integrating the molecular, cellular and pathophysiological aspects of the disease processes to their related symptoms and signs. The most recent knowledge of the anatomy, physiology, biochemistry, biophysics, and bioengineering of the gastrointestinal tract and the associated pancreatic, liver and biliary tract systems is presented and discussed. Gross and microscopic pathology and the clinical aspects of important gastroenterological diseases are then presented, with emphasis on integrating the molecular, cellular and pathophysiological aspects of the disease processes to their related symptoms and signs.

Subjects

gastroenterology | gastroenterology | anatomy | anatomy | physiology | physiology | biochemistry | biochemistry | biophysics | biophysics | bioengineering | bioengineering | gastrointestinal tract | gastrointestinal tract | pancreas | pancreas | liver | liver | biliary tract system | biliary tract system | gross pathology | gross pathology | microscopic pathology | microscopic pathology | clinical diseases | clinical diseases | molecular | molecular | cellular | cellular | pathophysiological processes | pathophysiological processes | symptoms | symptoms | medical | medical | health | health

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7.346 Synaptic Plasticity and Memory, from Molecules to Behavior (MIT) 7.346 Synaptic Plasticity and Memory, from Molecules to Behavior (MIT)

Description

In this course we will discover how innovative technologies combined with profound hypotheses have given rise to our current understanding of neuroscience. We will study both new and classical primary research papers with a focus on the plasticity between synapses in a brain structure called the hippocampus, which is believed to underlie the ability to create and retrieve certain classes of memories. We will discuss the basic electrical properties of neurons and how they fire. We will see how firing properties can change with experience, and we will study the biochemical basis of these changes. We will learn how molecular biology can be used to specifically change the biochemical properties of brain circuits, and we will see how these circuits form a representation of space giving rise to In this course we will discover how innovative technologies combined with profound hypotheses have given rise to our current understanding of neuroscience. We will study both new and classical primary research papers with a focus on the plasticity between synapses in a brain structure called the hippocampus, which is believed to underlie the ability to create and retrieve certain classes of memories. We will discuss the basic electrical properties of neurons and how they fire. We will see how firing properties can change with experience, and we will study the biochemical basis of these changes. We will learn how molecular biology can be used to specifically change the biochemical properties of brain circuits, and we will see how these circuits form a representation of space giving rise to

Subjects

synapse | synapse | memory | memory | neuroscience | neuroscience | plasticity | plasticity | hippocampus | hippocampus | LTP | LTP | molecular mechanism | molecular mechanism | Morris water maze | Morris water maze | place cells | place cells | NMDA | NMDA | synaptic tagging | synaptic tagging | long term depression | long term depression | cortex | cortex | synaptic plasticity | synaptic plasticity | neuronal circuits | neuronal circuits | specificity | specificity | CA1 | CA1 | grid cells | grid cells | schema | schema | fear memory | fear memory | biochemistry | biochemistry

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SP.287 Kitchen Chemistry (MIT) SP.287 Kitchen Chemistry (MIT)

Description

This seminar is designed to be an experimental and hands-on approach to applied chemistry (as seen in cooking). Cooking may be the oldest and most widespread application of chemistry and recipes may be the oldest practical result of chemical research. We shall do some cooking experiments to illustrate some chemical principles, including extraction, denaturation, and phase changes. This seminar is designed to be an experimental and hands-on approach to applied chemistry (as seen in cooking). Cooking may be the oldest and most widespread application of chemistry and recipes may be the oldest practical result of chemical research. We shall do some cooking experiments to illustrate some chemical principles, including extraction, denaturation, and phase changes.

Subjects

cooking | cooking | food | food | chemistry | chemistry | experiment | experiment | extraction | extraction | denaturation | denaturation | phase change | phase change | capsicum | capsicum | biochemistry | biochemistry | chocolate | chocolate | cheese | cheese | yeast | yeast | recipe | recipe | jam | jam | pectin | pectin | enzyme | enzyme | dairy | dairy | molecular gastronomy | molecular gastronomy | salt | salt | colloid | colloid | stability | stability | liquid nitrogen | liquid nitrogen | ice cream | ice cream | biology | biology | microbiology | microbiology

License

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7.89 Topics in Computational and Systems Biology (MIT) 7.89 Topics in Computational and Systems Biology (MIT)

Description

This is a seminar based on research literature. Papers covered are selected to illustrate important problems and approaches in the field of computational and systems biology, and provide students a framework from which to evaluate new developments. The MIT Initiative in Computational and Systems Biology (CSBi) is a campus-wide research and education program that links biology, engineering, and computer science in a multidisciplinary approach to the systematic analysis and modeling of complex biological phenomena. This course is one of a series of core subjects offered through the CSB PhD program, for students with an interest in interdisciplinary training and research in the area of computational and systems biology. Acknowledgments In addition to the staff listed on this page, the followi This is a seminar based on research literature. Papers covered are selected to illustrate important problems and approaches in the field of computational and systems biology, and provide students a framework from which to evaluate new developments. The MIT Initiative in Computational and Systems Biology (CSBi) is a campus-wide research and education program that links biology, engineering, and computer science in a multidisciplinary approach to the systematic analysis and modeling of complex biological phenomena. This course is one of a series of core subjects offered through the CSB PhD program, for students with an interest in interdisciplinary training and research in the area of computational and systems biology. Acknowledgments In addition to the staff listed on this page, the followi

Subjects

computational | computational | systems | systems | biology | biology | seminar | seminar | literature review | literature review | statistics | statistics | developmental | developmental | biochemistry | biochemistry | genetics | genetics | physics | physics | genomics | genomics | signal transduction | signal transduction | regulation | regulation | medicine | medicine | kinetics | kinetics | protein structure | protein structure | devices | devices | synthesis | synthesis | networks | networks | mapping | mapping

License

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5.111 Principles of Chemical Science (MIT) 5.111 Principles of Chemical Science (MIT)

Description

This course provides an introduction to the chemistry of biological, inorganic, and organic molecules. The emphasis is on basic principles of atomic and molecular electronic structure, thermodynamics, acid-base and redox equilibria, chemical kinetics, and catalysis. In an effort to illuminate connections between chemistry and biology, a list of the biology-, medicine-, and MIT research-related examples used in 5.111 is provided in Biology-Related Examples. Acknowledgements Development and implementation of the biology-related materials in this course were funded through an HHMI Professors grant to Prof. Catherine L. Drennan. This course provides an introduction to the chemistry of biological, inorganic, and organic molecules. The emphasis is on basic principles of atomic and molecular electronic structure, thermodynamics, acid-base and redox equilibria, chemical kinetics, and catalysis. In an effort to illuminate connections between chemistry and biology, a list of the biology-, medicine-, and MIT research-related examples used in 5.111 is provided in Biology-Related Examples. Acknowledgements Development and implementation of the biology-related materials in this course were funded through an HHMI Professors grant to Prof. Catherine L. Drennan.

Subjects

introductory chemistry | introductory chemistry | atomic structure | atomic structure | molecular electronic structure | molecular electronic structure | thermodynamics | thermodynamics | acid-base equillibrium | acid-base equillibrium | titration | titration | redox | redox | chemical kinetics | chemical kinetics | catalysis | catalysis | lewis structures | lewis structures | VSEPR theory | VSEPR theory | wave-particle duality | wave-particle duality | biochemistry | biochemistry | orbitals | orbitals | periodic trends | periodic trends | general chemistry | general chemistry | valence bond theory | valence bond theory | hybridization | hybridization | free energy | free energy | reaction mechanism | reaction mechanism | Rutherford backscattering | Rutherford backscattering

License

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20.201 Mechanisms of Drug Actions (MIT) 20.201 Mechanisms of Drug Actions (MIT)

Description

This course addresses the scientific basis for the development of new drugs. The first half of the semester begins with an overview of the drug discovery process, followed by fundamental principles of pharmacokinetics, pharmacodynamics, metabolism, and the mechanisms by which drugs cause therapeutic and toxic responses. The second half of the semester applies those principles to case studies and literature discussions of current problems with specific drugs, drug classes, and therapeutic targets. This course addresses the scientific basis for the development of new drugs. The first half of the semester begins with an overview of the drug discovery process, followed by fundamental principles of pharmacokinetics, pharmacodynamics, metabolism, and the mechanisms by which drugs cause therapeutic and toxic responses. The second half of the semester applies those principles to case studies and literature discussions of current problems with specific drugs, drug classes, and therapeutic targets.

Subjects

drugs | drugs | medicine | medicine | pharmaceutical | pharmaceutical | pharmacology | pharmacology | toxicology | toxicology | drug actions | drug actions | therapeutics | therapeutics | histology | histology | pathophysiology | pathophysiology | drug therapy | drug therapy | drug transporters | drug transporters | drug metabolism | drug metabolism | drug toxicity | drug toxicity | drug development | drug development | uptake | uptake | transport | transport | case study | case study | biochemistry | biochemistry | Pharmacokinetics | Pharmacokinetics | Pharmacogenetics | Pharmacogenetics | Omeprazole | Omeprazole | antibiotics | antibiotics | Oncology | Oncology | Statins | Statins | Sarilumab | Sarilumab | cystic fibrosis | cystic fibrosis

License

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7.016 Introductory Biology (MIT) 7.016 Introductory Biology (MIT)

Description

7.016 Introductory Biology provides an introduction to fundamental principles of biochemistry, molecular biology and genetics for understanding the functions of living systems. Taught for the first time in Fall 2013, this course covers examples of the use of chemical biology and twenty-first-century molecular genetics in understanding human health and therapeutic intervention. The MIT Biology Department Introductory Biology courses, 7.012, 7.013, 7.014, 7.015, and 7.016 all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as the structure and synthesis of proteins, how these mol 7.016 Introductory Biology provides an introduction to fundamental principles of biochemistry, molecular biology and genetics for understanding the functions of living systems. Taught for the first time in Fall 2013, this course covers examples of the use of chemical biology and twenty-first-century molecular genetics in understanding human health and therapeutic intervention. The MIT Biology Department Introductory Biology courses, 7.012, 7.013, 7.014, 7.015, and 7.016 all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as the structure and synthesis of proteins, how these mol

Subjects

biochemistry | biochemistry | molecular biology | molecular biology | genetics | genetics | human genetics | human genetics | pedigrees | pedigrees | biochemical genetics | biochemical genetics | chemical biology | chemical biology | molecular genetics | molecular genetics | recombinant DNA technology | recombinant DNA technology | cell biology | cell biology | cancer | cancer | viruses | viruses | HIV | HIV | bacteria | bacteria | antibiotics | antibiotics | human health | human health | therapeutic intervention | therapeutic intervention | cell signaling | cell signaling | evolution | evolution | reproduction | reproduction | infectious diseases | infectious diseases | therapeutics | therapeutics

License

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5.36 Biochemistry Laboratory (MIT) 5.36 Biochemistry Laboratory (MIT)

Description

The course, which spans two thirds of a semester, provides students with a research-inspired laboratory experience that introduces standard biochemical techniques in the context of investigating a current and exciting research topic, acquired resistance to the cancer drug Gleevec. Techniques include protein expression, purification, and gel analysis, PCR, site-directed mutagenesis, kinase activity assays, and protein structure viewing. This class is part of the new laboratory curriculum in the MIT Department of Chemistry. Undergraduate Research-Inspired Experimental Chemistry Alternatives (URIECA) introduces students to cutting edge research topics in a modular format. Acknowledgments Development of this course was funded through an HHMI Professors grant to Professor Catherine L. Drennan. The course, which spans two thirds of a semester, provides students with a research-inspired laboratory experience that introduces standard biochemical techniques in the context of investigating a current and exciting research topic, acquired resistance to the cancer drug Gleevec. Techniques include protein expression, purification, and gel analysis, PCR, site-directed mutagenesis, kinase activity assays, and protein structure viewing. This class is part of the new laboratory curriculum in the MIT Department of Chemistry. Undergraduate Research-Inspired Experimental Chemistry Alternatives (URIECA) introduces students to cutting edge research topics in a modular format. Acknowledgments Development of this course was funded through an HHMI Professors grant to Professor Catherine L. Drennan.

Subjects

URIECA | URIECA | laboratory | laboratory | kinase | kinase | cancer cells | cancer cells | laboratory techniques | laboratory techniques | DNA | DNA | cultures | cultures | UV-Vis | UV-Vis | agarose gel | agarose gel | Abl-gleevec | Abl-gleevec | affinity tags | affinity tags | lyse | lyse | digest | digest | mutants | mutants | resistance | resistance | gel electrophoresis | gel electrophoresis | recombinant | recombinant | nickel affinity | nickel affinity | inhibitors | inhibitors | biochemistry | biochemistry | kinetics | kinetics | enzyme | enzyme | inhibition | inhibition | purification | purification | expression | expression

License

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7.013 Introductory Biology (MIT) 7.013 Introductory Biology (MIT)

Description

The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material. 7.013 focuses on the application of the fundamental principles toward an understanding of human biology. Topics include genetics, cell biology, molecular biology, disease (infectious agents, inherited diseases and cancer), The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material. 7.013 focuses on the application of the fundamental principles toward an understanding of human biology. Topics include genetics, cell biology, molecular biology, disease (infectious agents, inherited diseases and cancer),

Subjects

biology | biology | biochemistry | biochemistry | genetics | genetics | molecular biology | molecular biology | recombinant DNA | recombinant DNA | cell cycle | cell cycle | cell signaling | cell signaling | cloning | cloning | stem cells | stem cells | cancer | cancer | immunology | immunology | virology | virology | genomics | genomics | molecular medicine | molecular medicine | DNA | DNA | RNA | RNA | proteins | proteins | replication | replication | transcription | transcription | mRNA | mRNA | translation | translation | ribosome | ribosome | nervous system | nervous system | amino acids | amino acids | polypeptide chain | polypeptide chain | cell biology | cell biology | neurobiology | neurobiology | gene regulation | gene regulation | protein structure | protein structure | protein synthesis | protein synthesis | gene structure | gene structure | PCR | PCR | polymerase chain reaction | polymerase chain reaction | protein localization | protein localization | endoplasmic reticulum | endoplasmic reticulum | human biology | human biology | inherited diseases | inherited diseases | developmental biology | developmental biology | evolution | evolution | human genetics | human genetics | human diseases | human diseases | infectious agents | infectious agents | infectious diseases | infectious diseases

License

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STS.035 The History of Computing (MIT) STS.035 The History of Computing (MIT)

Description

This course focuses on one particular aspect of the history of computing: the use of the computer as a scientific instrument. The electronic digital computer was invented to do science, and its applications range from physics to mathematics to biology to the humanities. What has been the impact of computing on the practice of science? Is the computer different from other scientific instruments? Is computer simulation a valid form of scientific experiment? Can computer models be viewed as surrogate theories? How does the computer change the way scientists approach the notions of proof, expertise, and discovery? No comprehensive history of scientific computing has yet been written. This seminar examines scientific articles, participants’ memoirs, and works by historians, sociologists, This course focuses on one particular aspect of the history of computing: the use of the computer as a scientific instrument. The electronic digital computer was invented to do science, and its applications range from physics to mathematics to biology to the humanities. What has been the impact of computing on the practice of science? Is the computer different from other scientific instruments? Is computer simulation a valid form of scientific experiment? Can computer models be viewed as surrogate theories? How does the computer change the way scientists approach the notions of proof, expertise, and discovery? No comprehensive history of scientific computing has yet been written. This seminar examines scientific articles, participants’ memoirs, and works by historians, sociologists,

Subjects

computers | computers | history | history | digital | digital | scientific instrument | scientific instrument | applied science | applied science | meteorology | meteorology | nuclear physics | nuclear physics | logic | logic | mathematics | mathematics | cognitive psychology | cognitive psychology | biochemistry | biochemistry | aerospace | aerospace | medicine | medicine | supercomputing | supercomputing | distributed computing | distributed computing | linguistics | linguistics | humanities | humanities | hypertext | hypertext

License

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5.08J Biological Chemistry II (MIT) 5.08J Biological Chemistry II (MIT)

Description

This course deals with a more advanced treatment of the biochemical mechanisms that underlie biological processes. Emphasis will be given to the experimental methods used to unravel how these processes fit into the cellular context as well as the coordinated regulation of these processes. Topics include macromolecular machines for energy and force transduction, regulation of biosynthetic and degradative pathways, and the structure and function of nucleic acids. This course deals with a more advanced treatment of the biochemical mechanisms that underlie biological processes. Emphasis will be given to the experimental methods used to unravel how these processes fit into the cellular context as well as the coordinated regulation of these processes. Topics include macromolecular machines for energy and force transduction, regulation of biosynthetic and degradative pathways, and the structure and function of nucleic acids.

Subjects

biochemistry | biochemistry | biological chemistry | biological chemistry | Rasmol | Rasmol | Deep Viewer | Deep Viewer | CHIME | CHIME | BLAST | BLAST | PDB | PDB | macromolecular machines | macromolecular machines | protein folding | protein folding | protein degradation | protein degradation | fatty acid synthases | fatty acid synthases | polyketide synthases | polyketide synthases | non-ribosomal polypeptide synthases | non-ribosomal polypeptide synthases | metal homeostasis | metal homeostasis | biochemical mechanisms | biochemical mechanisms | biochemical pathways | biochemical pathways | macromolecular interactions | macromolecular interactions | ribosome | ribosome | mRNA | mRNA | metabolic networking | metabolic networking | 5.08 | 5.08 | 7.08 | 7.08

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7.013 Introductory Biology (MIT) 7.013 Introductory Biology (MIT)

Description

The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.7.013 focuses on the application of the fundamental principles toward an understanding of human biology. Topics include genetics, cell biology, molecular biology, disease (infectious agents, inherited diseases and cancer), The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.7.013 focuses on the application of the fundamental principles toward an understanding of human biology. Topics include genetics, cell biology, molecular biology, disease (infectious agents, inherited diseases and cancer),

Subjects

biology | biology | biochemistry | biochemistry | genetics | genetics | molecular biology | molecular biology | recombinant DNA | recombinant DNA | cell cycle | cell cycle | cell signaling | cell signaling | cloning | cloning | stem cells | stem cells | cancer | cancer | immunology | immunology | virology | virology | genomics | genomics | molecular medicine | molecular medicine | DNA | DNA | RNA | RNA | proteins | proteins | replication | replication | transcription | transcription | mRNA | mRNA | translation | translation | ribosome | ribosome | nervous system | nervous system | amino acids | amino acids | polypeptide chain | polypeptide chain | cell biology | cell biology | neurobiology | neurobiology | gene regulation | gene regulation | protein structure | protein structure | protein synthesis | protein synthesis | gene structure | gene structure | PCR | PCR | polymerase chain reaction | polymerase chain reaction | protein localization | protein localization | endoplasmic reticulum | endoplasmic reticulum | human biology | human biology | inherited diseases | inherited diseases | developmental biology | developmental biology | evolution | evolution | human genetics | human genetics | human diseases | human diseases | infectious agents | infectious agents | infectious diseases | infectious diseases

License

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7.014 Introductory Biology (MIT) 7.014 Introductory Biology (MIT)

Description

The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.7.014 focuses on the application of these fundamental principles, toward an understanding of microorganisms as geochemical agents responsible for the evolution and renewal of the biosphere and of their role in human health The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.7.014 focuses on the application of these fundamental principles, toward an understanding of microorganisms as geochemical agents responsible for the evolution and renewal of the biosphere and of their role in human health

Subjects

microorganisms | microorganisms | geochemistry | geochemistry | geochemical agents | geochemical agents | biosphere | biosphere | bacterial genetics | bacterial genetics | carbon metabolism | carbon metabolism | energy metabolism | energy metabolism | productivity | productivity | biogeochemical cycles | biogeochemical cycles | molecular evolution | molecular evolution | population genetics | population genetics | evolution | evolution | population growth | population growth | biology | biology | biochemistry | biochemistry | genetics | genetics | molecular biology | molecular biology | recombinant DNA | recombinant DNA | cell cycle | cell cycle | cell signaling | cell signaling | cloning | cloning | stem cells | stem cells | cancer | cancer | immunology | immunology | virology | virology | genomics | genomics | molecular medicine | molecular medicine | DNA | DNA | RNA | RNA | proteins | proteins | replication | replication | transcription | transcription | mRNA | mRNA | translation | translation | ribosome | ribosome | nervous system | nervous system | amino acids | amino acids | polypeptide chain | polypeptide chain | cell biology | cell biology | neurobiology | neurobiology | gene regulation | gene regulation | protein structure | protein structure | protein synthesis | protein synthesis | gene structure | gene structure | PCR | PCR | polymerase chain reaction | polymerase chain reaction | protein localization | protein localization | endoplasmic reticulum | endoplasmic reticulum | ecology | ecology | communities | communities

License

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Communication (MIT) Communication (MIT)

Description

This introductory biology laboratory course covers the application of experimental techniques in microbiology, biochemistry, cell and developmental biology. Emphasis is placed on the integration of factual knowledge with understanding of the design of the experiments and data analysis in order to prepare the students for future research projects. Development of skills critical for writing about scientific findings in modern biology is also covered in the Scientific Communications portion of the curriculum, 7.02CI. Additional Faculty Dr. Katherine Bacon Schneider Dr. Jean-Francois Hamel Ms. Deborah Kruzel Dr. Megan Rokop This introductory biology laboratory course covers the application of experimental techniques in microbiology, biochemistry, cell and developmental biology. Emphasis is placed on the integration of factual knowledge with understanding of the design of the experiments and data analysis in order to prepare the students for future research projects. Development of skills critical for writing about scientific findings in modern biology is also covered in the Scientific Communications portion of the curriculum, 7.02CI. Additional Faculty Dr. Katherine Bacon Schneider Dr. Jean-Francois Hamel Ms. Deborah Kruzel Dr. Megan Rokop

Subjects

experimental biology | experimental biology | microbial genetics | microbial genetics | protein biochemistry | protein biochemistry | recombinant DNA | recombinant DNA | development | development | zebrafish | zebrafish | phase contrast microscopy | phase contrast microscopy | teratogenesis | teratogenesis | rna isolation | rna isolation | northern blot | northern blot | gene expression | gene expression | western blot | western blot | PCR | PCR | polymerase chain reaction | polymerase chain reaction | RNA gel | RNA gel | RNA fixation | RNA fixation | probe labeling | probe labeling | mutagenesis | mutagenesis | transposon | transposon | column chromatography | column chromatography | size-exclusion chromatography | size-exclusion chromatography | anion exchange chromatography | anion exchange chromatography | SDS-Page gel | SDS-Page gel | enzyme kinetics | enzyme kinetics | transformation | transformation | primers | primers

License

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Student Innovation: Developing Mobile Apps for learning

Description

Helen Ginn, a Biochemistry undergraduate at Magdalen College, talks about how she developed a mobile app to serve a specific niche task. Wales; http://creativecommons.org/licenses/by-nc-sa/2.0/uk/

Subjects

computing | biochemistry | App | programming | IT | mobile application | learning technologies | oxford | computing | biochemistry | App | programming | IT | mobile application | learning technologies | oxford | 2011-11-02

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http://creativecommons.org/licenses/by-nc-sa/2.0/uk/

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7.012 Introduction to Biology (MIT) 7.012 Introduction to Biology (MIT)

Description

The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.7.012 focuses on the exploration of current research in cell biology, immunology, neurobiology, genomics, and molecular medicine.AcknowledgmentsThe study materials, problem sets, and quiz materials used during Fall 2004 for The MIT Biology Department core courses, 7.012, 7.013, and 7.014, all cover the same core material, which includes the fundamental principles of biochemistry, genetics, molecular biology, and cell biology. Biological function at the molecular level is particularly emphasized and covers the structure and regulation of genes, as well as, the structure and synthesis of proteins, how these molecules are integrated into cells, and how these cells are integrated into multicellular systems and organisms. In addition, each version of the subject has its own distinctive material.7.012 focuses on the exploration of current research in cell biology, immunology, neurobiology, genomics, and molecular medicine.AcknowledgmentsThe study materials, problem sets, and quiz materials used during Fall 2004 for

Subjects

biology | biology | biochemistry | biochemistry | genetics | genetics | molecular biology | molecular biology | recombinant DNA | recombinant DNA | cell cycle | cell cycle | cell signaling | cell signaling | cloning | cloning | stem cells | stem cells | cancer | cancer | immunology | immunology | virology | virology | genomics | genomics | molecular medicine | molecular medicine | DNA | DNA | RNA | RNA | proteins | proteins | replication | replication | transcription | transcription | mRNA | mRNA | translation | translation | ribosome | ribosome | nervous system | nervous system | amino acids | amino acids | polypeptide chain | polypeptide chain | cell biology | cell biology | neurobiology | neurobiology | gene regulation | gene regulation | protein structure | protein structure | protein synthesis | protein synthesis | gene structure | gene structure | PCR | PCR | polymerase chain reaction | polymerase chain reaction | protein localization | protein localization | endoplasmic reticulum | endoplasmic reticulum

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ES.SP.287 Kitchen Chemistry (MIT) ES.SP.287 Kitchen Chemistry (MIT)

Description

This seminar is designed to be an experimental and hands-on approach to applied chemistry (as seen in cooking). Cooking may be the oldest and most widespread application of chemistry and recipes may be the oldest practical result of chemical research. We shall do some cooking experiments to illustrate some chemical principles, including extraction, denaturation, and phase changes. This seminar is designed to be an experimental and hands-on approach to applied chemistry (as seen in cooking). Cooking may be the oldest and most widespread application of chemistry and recipes may be the oldest practical result of chemical research. We shall do some cooking experiments to illustrate some chemical principles, including extraction, denaturation, and phase changes.

Subjects

cooking | cooking | food | food | chemistry | chemistry | experiment | experiment | extraction | extraction | denaturation | denaturation | phase change | phase change | capsicum | capsicum | biochemistry | biochemistry | chocolate | chocolate | cheese | cheese | yeast | yeast | recipe | recipe | jam | jam | pectin | pectin | enzyme | enzyme | dairy | dairy | molecular gastronomy | molecular gastronomy | salt | salt | colloid | colloid | stability | stability | liquid nitrogen | liquid nitrogen | ice cream | ice cream | biology | biology | microbiology | microbiology

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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12.007 Geobiology (MIT) 12.007 Geobiology (MIT)

Description

The interactive Earth system: Biology in geologic, environmental and climate change throughout Earth history. Since life began it has continually shaped and re-shaped the atmosphere, hydrosphere, cryosphere and the solid earth. Introduces the concept of "life as a geological agent" and examines the interaction between biology and the earth system during the roughly 4 billion years since life first appeared. Topics include the origin of the solar system and the early Earth atmosphere; the origin and evolution of life and its influence on climate up through and including the modern age and the problem of global warming; the global carbon cycle; and astrobiology. The interactive Earth system: Biology in geologic, environmental and climate change throughout Earth history. Since life began it has continually shaped and re-shaped the atmosphere, hydrosphere, cryosphere and the solid earth. Introduces the concept of "life as a geological agent" and examines the interaction between biology and the earth system during the roughly 4 billion years since life first appeared. Topics include the origin of the solar system and the early Earth atmosphere; the origin and evolution of life and its influence on climate up through and including the modern age and the problem of global warming; the global carbon cycle; and astrobiology.

Subjects

Big Bang | Big Bang | carbon cycle | carbon cycle | geobiochemistry | geobiochemistry | Solar System formation | Solar System formation | evolution | evolution | isotopic analysis: climate | isotopic analysis: climate | climate change | climate change | Snowball earth | Snowball earth | mesozoic | mesozoic | proterozoic | proterozoic | mass extinctions | mass extinctions | paleoclimate | paleoclimate | antiquity of life | antiquity of life | carbon dating | carbon dating | origin of life | origin of life | phylogenic trees | phylogenic trees

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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8.592 Statistical Physics in Biology (MIT) 8.592 Statistical Physics in Biology (MIT)

Description

Statistical Physics in Biology is a survey of problems at the interface of statistical physics and modern biology. Topics include: bioinformatic methods for extracting information content of DNA; gene finding, sequence comparison, and phylogenetic trees; physical interactions responsible for structure of biopolymers; DNA double helix, secondary structure of RNA, and elements of protein folding; Considerations of force, motion, and packaging; protein motors, membranes. We also look at collective behavior of biological elements, cellular networks, neural networks, and evolution.Technical RequirementsAny number of biological sequence comparison software tools can be used to import the .fna files found on this course site. Statistical Physics in Biology is a survey of problems at the interface of statistical physics and modern biology. Topics include: bioinformatic methods for extracting information content of DNA; gene finding, sequence comparison, and phylogenetic trees; physical interactions responsible for structure of biopolymers; DNA double helix, secondary structure of RNA, and elements of protein folding; Considerations of force, motion, and packaging; protein motors, membranes. We also look at collective behavior of biological elements, cellular networks, neural networks, and evolution.Technical RequirementsAny number of biological sequence comparison software tools can be used to import the .fna files found on this course site.

Subjects

Bioinformatics | Bioinformatics | DNA | DNA | gene finding | gene finding | sequence comparison | sequence comparison | phylogenetic trees | phylogenetic trees | biopolymers | biopolymers | DNA double helix | DNA double helix | secondary structure of RNA | secondary structure of RNA | protein folding | protein folding | protein motors | membranes | protein motors | membranes | cellular networks | cellular networks | neural networks | neural networks | evolution | evolution | statistical physics | statistical physics | molecular biology | molecular biology | deoxyribonucleic acid | deoxyribonucleic acid | genes | genes | genetics | genetics | gene sequencing | gene sequencing | phylogenetics | phylogenetics | double helix | double helix | RNA | RNA | ribonucleic acid | ribonucleic acid | force | force | motion | motion | packaging | packaging | protein motors | protein motors | membranes | membranes | biochemistry | biochemistry | genome | genome | optimization | optimization | partitioning | partitioning | pattern recognition | pattern recognition | collective behavior | collective behavior

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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7.012 Introduction to Biology (MIT) 7.012 Introduction to Biology (MIT)

Description

All three courses: 7.012, 7.013 and 7.014 cover the same core material which includes: the fundamental principles of biochemistry as they apply to introductory biology, genetics, molecular biology, basic recombinant DNA technology, and gene regulation.In addition, each version of the subject has its own distinctive material, described below. Note: All three versions require a familiarity with some basic chemistry. For details, see the Chemistry Self-evaluation.7.012 focuses on cell biology, immunology, neurobiology, and includes an exploration into current research in cancer, genomics, and molecular medicine. 7.013 focuses on the application of the fundamental principles toward an understanding of cells, human genetics and diseases, infectious agents, cancer, immunology, molecular All three courses: 7.012, 7.013 and 7.014 cover the same core material which includes: the fundamental principles of biochemistry as they apply to introductory biology, genetics, molecular biology, basic recombinant DNA technology, and gene regulation.In addition, each version of the subject has its own distinctive material, described below. Note: All three versions require a familiarity with some basic chemistry. For details, see the Chemistry Self-evaluation.7.012 focuses on cell biology, immunology, neurobiology, and includes an exploration into current research in cancer, genomics, and molecular medicine. 7.013 focuses on the application of the fundamental principles toward an understanding of cells, human genetics and diseases, infectious agents, cancer, immunology, molecular

Subjects

amino acids | amino acids | biochemistry | biochemistry | cancer | cancer | cell biology | cell biology | cell cycle | cell cycle | cell signaling | cell signaling | cloning | cloning | DNA | DNA | endoplasmic reticulum | endoplasmic reticulum | gene regulation | gene regulation | gene structure | gene structure | genetics | genetics | genomics | genomics | immunology | immunology | molecular biology | molecular biology | molecular medicine | molecular medicine | mRNA | mRNA | nervous system | nervous system | neurobiology | neurobiology | PCR | PCR | polymerase chain reaction | polymerase chain reaction | polypeptide chain | polypeptide chain | protein localization | protein localization | protein structure | protein structure | protein synthesis | protein synthesis | proteins | proteins | recombinant DNA | recombinant DNA | replication | replication | ribosome | ribosome | RNA | RNA | stem cells | stem cells | transcription | transcription | translation | translation | virology | virology | biology | biology

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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7.02 Introduction to Experimental Biology (MIT) 7.02 Introduction to Experimental Biology (MIT)

Description

7.02 is a laboratory course introducing you to experimental techniques in microbiology, biochemistry, and cell biology. 7.02 emphasizes integrating factual knowledge with understanding the design of experiments and data analysis. The course is divided into four modules:Genetics (GEN)Protein Biochemistry (PBC)Recombinant DNA Methods (RDM)Development (DEV)Each model introduces different experimental techniques and approaches. Although the techniques used in these modules may appear different, many of the underlying theoretical concepts are similar. The skills you learn in 7.02 will be very important should you later enter any research environment, or go on to graduate or medical school. 7.02 is a laboratory course introducing you to experimental techniques in microbiology, biochemistry, and cell biology. 7.02 emphasizes integrating factual knowledge with understanding the design of experiments and data analysis. The course is divided into four modules:Genetics (GEN)Protein Biochemistry (PBC)Recombinant DNA Methods (RDM)Development (DEV)Each model introduces different experimental techniques and approaches. Although the techniques used in these modules may appear different, many of the underlying theoretical concepts are similar. The skills you learn in 7.02 will be very important should you later enter any research environment, or go on to graduate or medical school.

Subjects

cell biology | cell biology | microbiology | microbiology | biochemistry | biochemistry

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20.440 Analysis of Biological Networks (BE.440) (MIT) 20.440 Analysis of Biological Networks (BE.440) (MIT)

Description

This class analyzes complex biological processes from the molecular, cellular, extracellular, and organ levels of hierarchy. Emphasis is placed on the basic biochemical and biophysical principles that govern these processes. Examples of processes to be studied include chemotaxis, the fixation of nitrogen into organic biological molecules, growth factor and hormone mediated signaling cascades, and signaling cascades leading to cell death in response to DNA damage. In each case, the availability of a resource, or the presence of a stimulus, results in some biochemical pathways being turned on while others are turned off. The course examines the dynamic aspects of these processes and details how biochemical mechanistic themes impinge on molecular/cellular/tissue/organ-level functions. Chemica This class analyzes complex biological processes from the molecular, cellular, extracellular, and organ levels of hierarchy. Emphasis is placed on the basic biochemical and biophysical principles that govern these processes. Examples of processes to be studied include chemotaxis, the fixation of nitrogen into organic biological molecules, growth factor and hormone mediated signaling cascades, and signaling cascades leading to cell death in response to DNA damage. In each case, the availability of a resource, or the presence of a stimulus, results in some biochemical pathways being turned on while others are turned off. The course examines the dynamic aspects of these processes and details how biochemical mechanistic themes impinge on molecular/cellular/tissue/organ-level functions. Chemica

Subjects

systems | systems | networks | networks | biochemistry | biochemistry | biology | biology | chemistry | chemistry | chemotaxis | chemotaxis | lactation | lactation | interferon | interferon | response | response | DNA | DNA | replication | replication | translation | translation | transcription | transcription | RNA | RNA | IFN | IFN | signals | signals | signaling | signaling | cellular | cellular | receptor | receptor

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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12.007 Geobiology (MIT) 12.007 Geobiology (MIT)

Description

This course introduces parallel evolution of life and the environment. Life processes are influenced by chemical and physical processes in the atmosphere, hydrosphere, cryosphere and the solid earth. In turn, life can influence chemical and physical processes on our planet. This course introduces the concept of life as a geological agent and examines the interaction between biology and the earth system during the roughly four billion years since life first appeared. This course introduces parallel evolution of life and the environment. Life processes are influenced by chemical and physical processes in the atmosphere, hydrosphere, cryosphere and the solid earth. In turn, life can influence chemical and physical processes on our planet. This course introduces the concept of life as a geological agent and examines the interaction between biology and the earth system during the roughly four billion years since life first appeared.

Subjects

carbon cycle | carbon cycle | isotopic analysis | isotopic analysis | geobiochemistry | geobiochemistry | climate | climate | climate change | climate change | Snowball earth | Snowball earth | mesozoic | mesozoic | proterozoic | proterozoic | mass extinctions | mass extinctions | paleoclimate | paleoclimate | antiquity of life | antiquity of life | carbon dating | carbon dating | origin of life | origin of life | phylogenic trees | phylogenic trees

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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BE.440 Analysis of Biological Networks (MIT) BE.440 Analysis of Biological Networks (MIT)

Description

This class analyzes complex biological processes from the molecular, cellular, extracellular, and organ levels of hierarchy. Emphasis is placed on the basic biochemical and biophysical principles that govern these processes. Examples of processes to be studied include chemotaxis, the fixation of nitrogen into organic biological molecules, growth factor and hormone mediated signaling cascades, and signaling cascades leading to cell death in response to DNA damage. In each case, the availability of a resource, or the presence of a stimulus, results in some biochemical pathways being turned on while others are turned off. The course examines the dynamic aspects of these processes and details how biochemical mechanistic themes impinge on molecular/cellular/tissue/organ-level functions. Chemica This class analyzes complex biological processes from the molecular, cellular, extracellular, and organ levels of hierarchy. Emphasis is placed on the basic biochemical and biophysical principles that govern these processes. Examples of processes to be studied include chemotaxis, the fixation of nitrogen into organic biological molecules, growth factor and hormone mediated signaling cascades, and signaling cascades leading to cell death in response to DNA damage. In each case, the availability of a resource, or the presence of a stimulus, results in some biochemical pathways being turned on while others are turned off. The course examines the dynamic aspects of these processes and details how biochemical mechanistic themes impinge on molecular/cellular/tissue/organ-level functions. Chemica

Subjects

systems | systems | networks | networks | biochemistry | biochemistry | biology | biology | chemistry | chemistry | chemotaxis | chemotaxis | lactation | lactation | interferon | interferon | response | response | DNA | DNA | replication | replication | translation | translation | transcription | transcription | RNA | RNA | IFN | IFN | signals | signals | signaling | signaling | cellular | cellular | receptor | receptor

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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