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6.852J Distributed Algorithms (MIT) 6.852J Distributed Algorithms (MIT)

Description

This course intends to provide a rigorous introduction to the most important research results in the area of distributed algorithms, and prepare interested students to carry out independent research in distributed algorithms. Topics covered include: design and analysis of concurrent algorithms, emphasizing those suitable for use in distributed networks, process synchronization, allocation of computational resources, distributed consensus, distributed graph algorithms, election of a leader in a network, distributed termination, deadlock detection, concurrency control, communication, and clock synchronization. Special consideration is given to issues of efficiency and fault tolerance. Formal models and proof methods for distributed computation are also discussed. Detailed information on the This course intends to provide a rigorous introduction to the most important research results in the area of distributed algorithms, and prepare interested students to carry out independent research in distributed algorithms. Topics covered include: design and analysis of concurrent algorithms, emphasizing those suitable for use in distributed networks, process synchronization, allocation of computational resources, distributed consensus, distributed graph algorithms, election of a leader in a network, distributed termination, deadlock detection, concurrency control, communication, and clock synchronization. Special consideration is given to issues of efficiency and fault tolerance. Formal models and proof methods for distributed computation are also discussed. Detailed information on the

Subjects

distributed algorithms | distributed algorithms | algorithm | algorithm | concurrent algorithms | concurrent algorithms | distributed networks | distributed networks | process synchronization | process synchronization | computational resources | computational resources | distributed consensus | distributed consensus | distributed graph algorithms | distributed graph algorithms | distributed termination | distributed termination | deadlock detection | deadlock detection | concurrency control | concurrency control | communication | communication | clock synchronization | clock synchronization | fault tolerance | fault tolerance | distributed computation | distributed computation | 6.852 | 6.852 | 18.437 | 18.437

License

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6.895 Computational Biology: Genomes, Networks, Evolution (MIT) 6.895 Computational Biology: Genomes, Networks, Evolution (MIT)

Description

This course focuses on the algorithmic and machine learning foundations of computational biology, combining theory with practice. We study the principles of algorithm design for biological datasets, and analyze influential problems and techniques. We use these to analyze real datasets from large-scale studies in genomics and proteomics. The topics covered include:Genomes: Biological Sequence Analysis, Hidden Markov Models, Gene Finding, RNA Folding, Sequence Alignment, Genome Assembly.Networks: Gene Expression Analysis, Regulatory Motifs, Graph Algorithms, Scale-free Networks, Network Motifs, Network Evolution.Evolution: Comparative Genomics, Phylogenetics, Genome Duplication, Genome Rearrangements, Evolutionary Theory, Rapid Evolution. This course focuses on the algorithmic and machine learning foundations of computational biology, combining theory with practice. We study the principles of algorithm design for biological datasets, and analyze influential problems and techniques. We use these to analyze real datasets from large-scale studies in genomics and proteomics. The topics covered include:Genomes: Biological Sequence Analysis, Hidden Markov Models, Gene Finding, RNA Folding, Sequence Alignment, Genome Assembly.Networks: Gene Expression Analysis, Regulatory Motifs, Graph Algorithms, Scale-free Networks, Network Motifs, Network Evolution.Evolution: Comparative Genomics, Phylogenetics, Genome Duplication, Genome Rearrangements, Evolutionary Theory, Rapid Evolution.

Subjects

Genomes: Biological sequence analysis | Genomes: Biological sequence analysis | hidden Markov models | hidden Markov models | gene finding | gene finding | RNA folding | RNA folding | sequence alignment | sequence alignment | genome assembly | genome assembly | Networks: Gene expression analysis | Networks: Gene expression analysis | regulatory motifs | regulatory motifs | graph algorithms | graph algorithms | scale-free networks | scale-free networks | network motifs | network motifs | network evolution | network evolution | Evolution: Comparative genomics | Evolution: Comparative genomics | phylogenetics | phylogenetics | genome duplication | genome duplication | genome rearrangements | genome rearrangements | evolutionary theory | evolutionary theory | rapid evolution | rapid evolution

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (SMA 5503) (MIT) 6.046J Introduction to Algorithms (SMA 5503) (MIT)

Description

This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms). This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms).

Subjects

algorithms | algorithms | efficient algorithms | efficient algorithms | sorting | sorting | search trees | search trees | heaps | heaps | hashing | hashing | divide-and-conquer | divide-and-conquer | dynamic programming | dynamic programming | amortized analysis | amortized analysis | graph algorithms | graph algorithms | shortest paths | shortest paths | network flow | network flow | computational geometry | computational geometry | number-theoretic algorithms | number-theoretic algorithms | polynomial and matrix calculations | polynomial and matrix calculations | caching | caching | parallel computing | parallel computing | SMA 5503 | SMA 5503 | 6.046 | 6.046

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (MIT) 6.046J Introduction to Algorithms (MIT)

Description

This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing. This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.

Subjects

algorithms | algorithms | efficient algorithms | efficient algorithms | sorting | sorting | search trees | search trees | heaps | heaps | hashing | hashing | divide-and-conquer | divide-and-conquer | dynamic programming | dynamic programming | amortized analysis | amortized analysis | graph algorithms | graph algorithms | shortest paths | shortest paths | network flow | network flow | computational geometry | computational geometry | number-theoretic algorithms | number-theoretic algorithms | polynomial and matrix calculations | polynomial and matrix calculations | caching | caching | parallel computing | parallel computing | 6.046 | 6.046 | 18.410 | 18.410

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.852J Distributed Algorithms (MIT) 6.852J Distributed Algorithms (MIT)

Description

6.852J / 18.437J intends to: (1) provide a rigorous introduction to the most important research results in the area of distributed algorithms, and (2) prepare interested students to carry out independent research in distributed algorithms. Topics covered include: design and analysis of concurrent algorithms, emphasizing those suitable for use in distributed networks, process synchronization, allocation of computational resources, distributed consensus, distributed graph algorithms, election of a leader in a network, distributed termination, deadlock detection, concurrency control, communication, and clock synchronization. Special consideration is given to issues of efficiency and fault tolerance. Formal models and proof methods for distributed computation are also discussed. 6.852J / 18.437J intends to: (1) provide a rigorous introduction to the most important research results in the area of distributed algorithms, and (2) prepare interested students to carry out independent research in distributed algorithms. Topics covered include: design and analysis of concurrent algorithms, emphasizing those suitable for use in distributed networks, process synchronization, allocation of computational resources, distributed consensus, distributed graph algorithms, election of a leader in a network, distributed termination, deadlock detection, concurrency control, communication, and clock synchronization. Special consideration is given to issues of efficiency and fault tolerance. Formal models and proof methods for distributed computation are also discussed.

Subjects

distributed algorithms | distributed algorithms | algorithm | algorithm | concurrent algorithms | concurrent algorithms | distributed networks | distributed networks | process synchronization | process synchronization | computational resources | computational resources | distributed consensus | distributed consensus | distributed graph algorithms | distributed graph algorithms | distributed termination | distributed termination | deadlock detection | deadlock detection | concurrency control | concurrency control | communication | communication | clock synchronization | clock synchronization | fault tolerance | fault tolerance | distributed computation | distributed computation | 6.852 | 6.852 | 18.437 | 18.437

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (SMA 5503) (MIT) 6.046J Introduction to Algorithms (SMA 5503) (MIT)

Description

Includes audio/video content: AV lectures. This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms). Includes audio/video content: AV lectures. This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms).

Subjects

algorithms | algorithms | efficient algorithms | efficient algorithms | sorting | sorting | search trees | search trees | heaps | heaps | hashing | hashing | divide-and-conquer | divide-and-conquer | dynamic programming | dynamic programming | amortized analysis | amortized analysis | graph algorithms | graph algorithms | shortest paths | shortest paths | network flow | network flow | computational geometry | computational geometry | number-theoretic algorithms | number-theoretic algorithms | polynomial and matrix calculations | polynomial and matrix calculations | caching | caching | parallel computing | parallel computing

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.046J Design and Analysis of Algorithms (MIT) 6.046J Design and Analysis of Algorithms (MIT)

Description

Techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics include sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; greedy algorithms; amortized analysis; graph algorithms; and shortest paths. Advanced topics may include network flow, computational geometry, number-theoretic algorithms, polynomial and matrix calculations, caching, and parallel computing. Techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics include sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; greedy algorithms; amortized analysis; graph algorithms; and shortest paths. Advanced topics may include network flow, computational geometry, number-theoretic algorithms, polynomial and matrix calculations, caching, and parallel computing.

Subjects

sorting | sorting | search trees | search trees | heaps | heaps | hashing | hashing | divide and conquer | divide and conquer | dynamic programming | dynamic programming | greedy algorithms | greedy algorithms | amortized analysis | amortized analysis | graph algorithms | graph algorithms | shortest paths | shortest paths

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.047 Computational Biology: Genomes, Networks, Evolution (MIT) 6.047 Computational Biology: Genomes, Networks, Evolution (MIT)

Description

This course focuses on the algorithmic and machine learning foundations of computational biology, combining theory with practice. We study the principles of algorithm design for biological datasets, and analyze influential problems and techniques. We use these to analyze real datasets from large-scale studies in genomics and proteomics. The topics covered include: Genomes: biological sequence analysis, hidden Markov models, gene finding, RNA folding, sequence alignment, genome assembly Networks: gene expression analysis, regulatory motifs, graph algorithms, scale-free networks, network motifs, network evolution Evolution: comparative genomics, phylogenetics, genome duplication, genome rearrangements, evolutionary theory, rapid evolution This course focuses on the algorithmic and machine learning foundations of computational biology, combining theory with practice. We study the principles of algorithm design for biological datasets, and analyze influential problems and techniques. We use these to analyze real datasets from large-scale studies in genomics and proteomics. The topics covered include: Genomes: biological sequence analysis, hidden Markov models, gene finding, RNA folding, sequence alignment, genome assembly Networks: gene expression analysis, regulatory motifs, graph algorithms, scale-free networks, network motifs, network evolution Evolution: comparative genomics, phylogenetics, genome duplication, genome rearrangements, evolutionary theory, rapid evolution

Subjects

computational biology | computational biology | algorithms | algorithms | machine learning | machine learning | biology | biology | biological datasets | biological datasets | genomics | genomics | proteomics | proteomics | genomes | genomes | sequence analysis | sequence analysis | sequence alignment | sequence alignment | genome assembly | genome assembly | network motifs | network motifs | network evolution | network evolution | graph algorithms | graph algorithms | phylogenetics | phylogenetics | comparative genomics | comparative genomics | python | python | probability | probability | statistics | statistics | entropy | entropy | information | information

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.856J Randomized Algorithms (MIT) 6.856J Randomized Algorithms (MIT)

Description

This course examines how randomization can be used to make algorithms simpler and more efficient via random sampling, random selection of witnesses, symmetry breaking, and Markov chains. Topics covered include: randomized computation; data structures (hash tables, skip lists); graph algorithms (minimum spanning trees, shortest paths, minimum cuts); geometric algorithms (convex hulls, linear programming in fixed or arbitrary dimension); approximate counting; parallel algorithms; online algorithms; derandomization techniques; and tools for probabilistic analysis of algorithms. This course examines how randomization can be used to make algorithms simpler and more efficient via random sampling, random selection of witnesses, symmetry breaking, and Markov chains. Topics covered include: randomized computation; data structures (hash tables, skip lists); graph algorithms (minimum spanning trees, shortest paths, minimum cuts); geometric algorithms (convex hulls, linear programming in fixed or arbitrary dimension); approximate counting; parallel algorithms; online algorithms; derandomization techniques; and tools for probabilistic analysis of algorithms.

Subjects

Randomized Algorithms | Randomized Algorithms | algorithms | algorithms | efficient in time and space | efficient in time and space | randomization | randomization | computational problems | computational problems | data structures | data structures | graph algorithms | graph algorithms | optimization | optimization | geometry | geometry | Markov chains | Markov chains | sampling | sampling | estimation | estimation | geometric algorithms | geometric algorithms | parallel and distributed algorithms | parallel and distributed algorithms | parallel and ditributed algorithm | parallel and ditributed algorithm | parallel and distributed algorithm | parallel and distributed algorithm | random sampling | random sampling | random selection of witnesses | random selection of witnesses | symmetry breaking | symmetry breaking | randomized computational models | randomized computational models | hash tables | hash tables | skip lists | skip lists | minimum spanning trees | minimum spanning trees | shortest paths | shortest paths | minimum cuts | minimum cuts | convex hulls | convex hulls | linear programming | linear programming | fixed dimension | fixed dimension | arbitrary dimension | arbitrary dimension | approximate counting | approximate counting | parallel algorithms | parallel algorithms | online algorithms | online algorithms | derandomization techniques | derandomization techniques | probabilistic analysis | probabilistic analysis | computational number theory | computational number theory | simplicity | simplicity | speed | speed | design | design | basic probability theory | basic probability theory | application | application | randomized complexity classes | randomized complexity classes | game-theoretic techniques | game-theoretic techniques | Chebyshev | Chebyshev | moment inequalities | moment inequalities | limited independence | limited independence | coupon collection | coupon collection | occupancy problems | occupancy problems | tail inequalities | tail inequalities | Chernoff bound | Chernoff bound | conditional expectation | conditional expectation | probabilistic method | probabilistic method | random walks | random walks | algebraic techniques | algebraic techniques | probability amplification | probability amplification | sorting | sorting | searching | searching | combinatorial optimization | combinatorial optimization | approximation | approximation | counting problems | counting problems | distributed algorithms | distributed algorithms | 6.856 | 6.856 | 18.416 | 18.416

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.046J Design and Analysis of Algorithms (MIT) 6.046J Design and Analysis of Algorithms (MIT)

Description

Includes audio/video content: AV lectures. This is an intermediate algorithms course with an emphasis on teaching techniques for the design and analysis of efficient algorithms, emphasizing methods of application. Topics include divide-and-conquer, randomization, dynamic programming, greedy algorithms, incremental improvement, complexity, and cryptography. Includes audio/video content: AV lectures. This is an intermediate algorithms course with an emphasis on teaching techniques for the design and analysis of efficient algorithms, emphasizing methods of application. Topics include divide-and-conquer, randomization, dynamic programming, greedy algorithms, incremental improvement, complexity, and cryptography.

Subjects

algorithm | algorithm | sorting | sorting | search trees | search trees | heaps | heaps | hashing | hashing | divide and conquer | divide and conquer | dynamic programming | dynamic programming | greedy algorithms | greedy algorithms | amortized analysis | amortized analysis | graph algorithms | graph algorithms | shortest paths | shortest paths | network flow | network flow | cryptography | cryptography

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.047 Computational Biology (MIT) 6.047 Computational Biology (MIT)

Description

This course covers the algorithmic and machine learning foundations of computational biology combining theory with practice. We cover both foundational topics in computational biology, and current research frontiers. We study fundamental techniques, recent advances in the field, and work directly with current large-scale biological datasets. This course covers the algorithmic and machine learning foundations of computational biology combining theory with practice. We cover both foundational topics in computational biology, and current research frontiers. We study fundamental techniques, recent advances in the field, and work directly with current large-scale biological datasets.

Subjects

Genomes | Genomes | Networks | Networks | Evolution | Evolution | computational biology | computational biology | genomics | genomics | comparative genomics | comparative genomics | epigenomics | epigenomics | functional genomics | motifs | functional genomics | motifs | phylogenomics | phylogenomics | personal genomics | personal genomics | algorithms | algorithms | machine learning | machine learning | biology | biology | biological datasets | biological datasets | proteomics | proteomics | sequence analysis | sequence analysis | sequence alignment | sequence alignment | genome assembly | genome assembly | network motifs | network motifs | network evolution | network evolution | graph algorithms | graph algorithms | phylogenetics | phylogenetics | python | python | probability | probability | statistics | statistics | entropy | entropy | information | information

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see http://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (SMA 5503) (MIT)

Description

This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms).

Subjects

algorithms | efficient algorithms | sorting | search trees | heaps | hashing | divide-and-conquer | dynamic programming | amortized analysis | graph algorithms | shortest paths | network flow | computational geometry | number-theoretic algorithms | polynomial and matrix calculations | caching | parallel computing

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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Algorithms

Description

This course focuses on the fundamentals of computer algorithms, emphasizing methods useful in practice. This free course may be completed online at any time. See course site for detailed overview and learning outcomes. (Computer Science 303)

Subjects

computer science | computer | algorithms | programming | analysis | sorting | dynamic | graph theory | graph algorithms | greedy algorithms | np-completeness | Computer science | I100

License

Attribution 2.0 UK: England & Wales Attribution 2.0 UK: England & Wales http://creativecommons.org/licenses/by/2.0/uk/ http://creativecommons.org/licenses/by/2.0/uk/

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6.852J Distributed Algorithms (MIT)

Description

This course intends to provide a rigorous introduction to the most important research results in the area of distributed algorithms, and prepare interested students to carry out independent research in distributed algorithms. Topics covered include: design and analysis of concurrent algorithms, emphasizing those suitable for use in distributed networks, process synchronization, allocation of computational resources, distributed consensus, distributed graph algorithms, election of a leader in a network, distributed termination, deadlock detection, concurrency control, communication, and clock synchronization. Special consideration is given to issues of efficiency and fault tolerance. Formal models and proof methods for distributed computation are also discussed. Detailed information on the

Subjects

distributed algorithms | algorithm | concurrent algorithms | distributed networks | process synchronization | computational resources | distributed consensus | distributed graph algorithms | distributed termination | deadlock detection | concurrency control | communication | clock synchronization | fault tolerance | distributed computation | 6.852 | 18.437

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.895 Computational Biology: Genomes, Networks, Evolution (MIT)

Description

This course focuses on the algorithmic and machine learning foundations of computational biology, combining theory with practice. We study the principles of algorithm design for biological datasets, and analyze influential problems and techniques. We use these to analyze real datasets from large-scale studies in genomics and proteomics. The topics covered include:Genomes: Biological Sequence Analysis, Hidden Markov Models, Gene Finding, RNA Folding, Sequence Alignment, Genome Assembly.Networks: Gene Expression Analysis, Regulatory Motifs, Graph Algorithms, Scale-free Networks, Network Motifs, Network Evolution.Evolution: Comparative Genomics, Phylogenetics, Genome Duplication, Genome Rearrangements, Evolutionary Theory, Rapid Evolution.

Subjects

Genomes: Biological sequence analysis | hidden Markov models | gene finding | RNA folding | sequence alignment | genome assembly | Networks: Gene expression analysis | regulatory motifs | graph algorithms | scale-free networks | network motifs | network evolution | Evolution: Comparative genomics | phylogenetics | genome duplication | genome rearrangements | evolutionary theory | rapid evolution

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (SMA 5503) (MIT)

Description

This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms).

Subjects

algorithms | efficient algorithms | sorting | search trees | heaps | hashing | divide-and-conquer | dynamic programming | amortized analysis | graph algorithms | shortest paths | network flow | computational geometry | number-theoretic algorithms | polynomial and matrix calculations | caching | parallel computing | SMA 5503 | 6.046

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (MIT)

Description

This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.

Subjects

algorithms | efficient algorithms | sorting | search trees | heaps | hashing | divide-and-conquer | dynamic programming | amortized analysis | graph algorithms | shortest paths | network flow | computational geometry | number-theoretic algorithms | polynomial and matrix calculations | caching | parallel computing | 6.046 | 18.410

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.852J Distributed Algorithms (MIT)

Description

6.852J / 18.437J intends to: (1) provide a rigorous introduction to the most important research results in the area of distributed algorithms, and (2) prepare interested students to carry out independent research in distributed algorithms. Topics covered include: design and analysis of concurrent algorithms, emphasizing those suitable for use in distributed networks, process synchronization, allocation of computational resources, distributed consensus, distributed graph algorithms, election of a leader in a network, distributed termination, deadlock detection, concurrency control, communication, and clock synchronization. Special consideration is given to issues of efficiency and fault tolerance. Formal models and proof methods for distributed computation are also discussed.

Subjects

distributed algorithms | algorithm | concurrent algorithms | distributed networks | process synchronization | computational resources | distributed consensus | distributed graph algorithms | distributed termination | deadlock detection | concurrency control | communication | clock synchronization | fault tolerance | distributed computation | 6.852 | 18.437

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.047 Computational Biology (MIT)

Description

This course covers the algorithmic and machine learning foundations of computational biology combining theory with practice. We cover both foundational topics in computational biology, and current research frontiers. We study fundamental techniques, recent advances in the field, and work directly with current large-scale biological datasets.

Subjects

Genomes | Networks | Evolution | computational biology | genomics | comparative genomics | epigenomics | functional genomics | motifs | phylogenomics | personal genomics | algorithms | machine learning | biology | biological datasets | proteomics | sequence analysis | sequence alignment | genome assembly | network motifs | network evolution | graph algorithms | phylogenetics | python | probability | statistics | entropy | information

License

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6.046J Design and Analysis of Algorithms (MIT)

Description

This is an intermediate algorithms course with an emphasis on teaching techniques for the design and analysis of efficient algorithms, emphasizing methods of application. Topics include divide-and-conquer, randomization, dynamic programming, greedy algorithms, incremental improvement, complexity, and cryptography.

Subjects

algorithm | sorting | search trees | heaps | hashing | divide and conquer | dynamic programming | greedy algorithms | amortized analysis | graph algorithms | shortest paths | network flow | cryptography

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.046J Design and Analysis of Algorithms (MIT)

Description

Techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics include sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; greedy algorithms; amortized analysis; graph algorithms; and shortest paths. Advanced topics may include network flow, computational geometry, number-theoretic algorithms, polynomial and matrix calculations, caching, and parallel computing.

Subjects

sorting | search trees | heaps | hashing | divide and conquer | dynamic programming | greedy algorithms | amortized analysis | graph algorithms | shortest paths

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.046J Introduction to Algorithms (SMA 5503) (MIT)

Description

This course teaches techniques for the design and analysis of efficient algorithms, emphasizing methods useful in practice. Topics covered include: sorting; search trees, heaps, and hashing; divide-and-conquer; dynamic programming; amortized analysis; graph algorithms; shortest paths; network flow; computational geometry; number-theoretic algorithms; polynomial and matrix calculations; caching; and parallel computing.This course was also taught as part of the Singapore-MIT Alliance (SMA) programme as course number SMA 5503 (Analysis and Design of Algorithms).

Subjects

algorithms | efficient algorithms | sorting | search trees | heaps | hashing | divide-and-conquer | dynamic programming | amortized analysis | graph algorithms | shortest paths | network flow | computational geometry | number-theoretic algorithms | polynomial and matrix calculations | caching | parallel computing

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.856J Randomized Algorithms (MIT)

Description

This course examines how randomization can be used to make algorithms simpler and more efficient via random sampling, random selection of witnesses, symmetry breaking, and Markov chains. Topics covered include: randomized computation; data structures (hash tables, skip lists); graph algorithms (minimum spanning trees, shortest paths, minimum cuts); geometric algorithms (convex hulls, linear programming in fixed or arbitrary dimension); approximate counting; parallel algorithms; online algorithms; derandomization techniques; and tools for probabilistic analysis of algorithms.

Subjects

Randomized Algorithms | algorithms | efficient in time and space | randomization | computational problems | data structures | graph algorithms | optimization | geometry | Markov chains | sampling | estimation | geometric algorithms | parallel and distributed algorithms | parallel and ditributed algorithm | parallel and distributed algorithm | random sampling | random selection of witnesses | symmetry breaking | randomized computational models | hash tables | skip lists | minimum spanning trees | shortest paths | minimum cuts | convex hulls | linear programming | fixed dimension | arbitrary dimension | approximate counting | parallel algorithms | online algorithms | derandomization techniques | probabilistic analysis | computational number theory | simplicity | speed | design | basic probability theory | application | randomized complexity classes | game-theoretic techniques | Chebyshev | moment inequalities | limited independence | coupon collection | occupancy problems | tail inequalities | Chernoff bound | conditional expectation | probabilistic method | random walks | algebraic techniques | probability amplification | sorting | searching | combinatorial optimization | approximation | counting problems | distributed algorithms | 6.856 | 18.416

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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6.881 Computational Personal Genomics: Making Sense of Complete Genomes (MIT)

Description

With the growing availability and lowering costs of genotyping and personal genome sequencing, the focus has shifted from the ability to obtain the sequence to the ability to make sense of the resulting information. This course is aimed at exploring the computational challenges associated with interpreting how sequence differences between individuals lead to phenotypic differences in gene expression, disease predisposition, or response to treatment.

Subjects

Genomes | Networks | Evolution | computational biology | genomics | comparative genomics | epigenomics | functional genomics | motifs | phylogenomics | personal genomics | algorithms | machine learning | biology | biological datasets | proteomics | sequence analysis | sequence alignment | genome assembly | network motifs | network evolution | graph algorithms | phylogenetics | python | probability | statistics | entropy | information

License

Content within individual OCW courses is (c) by the individual authors unless otherwise noted. MIT OpenCourseWare materials are licensed by the Massachusetts Institute of Technology under a Creative Commons License (Attribution-NonCommercial-ShareAlike). For further information see https://ocw.mit.edu/terms/index.htm

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